ExperimentSetReplicate

ExperimentSet4DNES4ZZWKX4
released
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RNA-seq on single positive CD8 T cells isolated from thymus

   July 21st, 2023 at 8:55pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
CD8-positive, alpha-beta thymocyte
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXNEUIQEY
Bio Rep 1, Tec Rep 1
RNA-seq on CD8-positive, alpha-beta thymocyte
File
Read Positions (bam)
4DNFI95XDYJH
3.59m
3.3m
Experiment
4DNEX2PNXVPX
Bio Rep 2, Tec Rep 1
RNA-seq on CD8-positive, alpha-beta thymocyte
File
Read Positions (bam)
4DNFI2EG2X9R
2.77m
2.53m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXNEUIQEY
Bio Rep 1, Tec Rep 1
RNA-seq on CD8-positive, alpha-beta thymocyte
File
Gene Expression (tsv)
4DNFIYHSA44M
3.83m
1.37k
Experiment
4DNEX2PNXVPX
Bio Rep 2, Tec Rep 1
RNA-seq on CD8-positive, alpha-beta thymocyte
File
Gene Expression (tsv)
4DNFILLVA96H
2.51m
962