ExperimentSetReplicate

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ExperimentSet4DNES4YSOI49
released
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RAD21 ChIP-seq on 24 hr dTAG treated dTAG-NIPBL clone D7

   October 18th, 2024 at 1:48pm
Source Publication
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation
Popay TM, Pant A, et al., bioRxiv 2024

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
dTAG-NIPBL hTERT-RPE-1 - clone D7
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: RAD21 protein

4 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
From Multiple Experiments
4DNES4YSOI49
Multiple Experiments
File
4DNFI6DE6SQD
peaks (bigbed)
1.3 MB
File
4DNFI9DY3MTN
conservative peaks (bigbed)
1.3 MB
File
4DNFI1IY1AJA
signal fold change (bw)
1.01 GB
Experiment
4DNEXT5ZZMNK
Bio Rep 1, Tec Rep 1
ChIP-seq against RAD21 protein on dTAG-NIPBL hTERT-RPE-1 - clone D7
File
4DNFITYKPXU7
read positions (bed)
435.8 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXT5ZZMNK
Bio Rep 1, Tec Rep 1
ChIP-seq against RAD21 protein on dTAG-NIPBL hTERT-RPE-1 - clone D7
File
Read Positions (bed)
4DNFITYKPXU7
0.72
0.69
26.01m