ExperimentSetReplicate

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ExperimentSet4DNES4UH8UR5
released
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in situ Hi-C on wild-type WTC-11 iPSC cells differentiated for 2 days to atrial cardiac myocytes.

   December 18th, 2024 at 5:04pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiogenic mesoderm
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DdeI and DpnII

10 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
From Multiple Experiments
4DNES4UH8UR5
Multiple Experiments
File
4DNFIFRT4X21
contact list-combined (pairs)
16.03 GB
File
4DNFIWUZLEWY
contact matrix (hic)
4.15 GB
File
4DNFIK5SQFY2
contact matrix (mcool)
2.77 GB
File
4DNFIYZCUL6J
compartments (bw)
202.58 kB
File
4DNFIBAC2Y3U
boundaries (bed)
178.3 kB
File
4DNFI2KVKW9G
insulation score-diamond (bw)
7.94 MB
Experiment
4DNEXSHI352U
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiogenic mesoderm with DdeI and DpnII
File
4DNFI9Y8VKEN
alignments (bam)
114.77 GB
File
4DNFIWFYLK8E
contact list-replicate (pairs)
7.05 GB
Experiment
4DNEXQDELPM8
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiogenic mesoderm with DdeI and DpnII
File
4DNFIQV7OPZ4
alignments (bam)
164.14 GB
File
4DNFII6JK5TG
contact list-replicate (pairs)
10.43 GB

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNES4UH8UR5
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIFRT4X21
968.89m
32.945%
55.675%
11.38%
Experiment
4DNEXSHI352U
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiogenic mesoderm with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIWFYLK8E
410.12m
35.706%
50.942%
13.353%
Experiment
4DNEXQDELPM8
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiogenic mesoderm with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFII6JK5TG
621.19m
31.599%
57.075%
11.326%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES4UH8UR5
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIK5SQFY2
None