ExperimentSetReplicate

ExperimentSet4DNES4TZF88L
released
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in situ Hi-C on cerebellar granule neurons with control vector isolated using FANS at day 14 after in vivo electroporation from dCas9-KRAB mouse postnatal day 20

   August 13th, 2025 at 3:35pm

Note: Superseding Item - 4DNES4TZF88L  

This experiment set supersedes 4DNESH3GQ3QH because new biological replicates and additional sequencing replicates were added.

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
cerebellar granule neuron - 14 days old
Experiment Type(s) 
in situ Hi-C
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Enzyme: MboI

18 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNES4TZF88L
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIG5NX1EC
762.43m
59.712%
17.782%
22.506%
Experiment
4DNEXXW1BPSD
Bio Rep 1, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIJQ98CKX
71.71m
62.82%
15.829%
21.352%
Experiment
4DNEXR2Y86SU
Bio Rep 2, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIL5ER5PN
71.1m
61.404%
13.5%
25.097%
Experiment
4DNEXLHP9GS7
Bio Rep 3, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIV7MG4XL
114.98m
63.385%
13.369%
23.246%
Experiment
4DNEXMSWQDRR
Bio Rep 4, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIOYWV69P
112.9m
63.785%
15.879%
20.337%
Experiment
4DNEXBHZPX11
Bio Rep 5, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFI2OU7XZP
90.53m
63.562%
12.462%
23.976%
Experiment
4DNEXH21B45F
Bio Rep 6, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIMCV8D3H
227.45m
55.316%
20.945%
23.739%
Experiment
4DNEX1MC1WV8
Bio Rep 7, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIS5LTKH3
165.88m
55.643%
22.301%
22.056%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES4TZF88L
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIZDPTNYQ
100000