ExperimentSetReplicate

ExperimentSet4DNES4R7Z59B
released
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in situ Hi-C on dTAGV treated hTert-RPE1 FKBP12F36V-Rad21 clone B1 - 24 hr

   October 17th, 2024 at 9:16pm
Source Publication
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation
Popay TM, Pant A, et al., bioRxiv 2024

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
dTAG-RAD21 hTERT-RPE-1 - clone B1
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: Arima - A1, A2

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES4R7Z59B
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI1JKZBTC
321.54m
41.725%
43.415%
14.86%
Experiment
4DNEX7IFZCXF
Bio Rep 1, Tec Rep 1
in situ Hi-C on dTAG-RAD21 hTERT-RPE-1 - clone B1 with Arima - A1, A2
File
Contact List-replicate (pairs)
4DNFIG91IKGL
342.18m
41.717%
42.802%
15.481%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES4R7Z59B
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI5MCAV8X
None