ExperimentSetReplicate

ExperimentSet4DNES4NO6DRP
released
View JSON

in situ Hi-C on heterozygous Crispr modified TBX5 with 2 bp insertion causing frameshift WTC-11 iPSC cells differentiated for 20 days to artrial cardiac myocytes.

   December 18th, 2024 at 5:04pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Enzyme: DdeI and DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES4NO6DRP
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIGTUWJ8O
924.03m
36.945%
49.463%
13.592%
Experiment
4DNEXSRQ5AH2
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIAVDPHUH
416.37m
43.177%
41.18%
15.643%
Experiment
4DNEXAFTV8VX
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFIMK4Z3FP
572.21m
32.861%
53.454%
13.685%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES4NO6DRP
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI32RESZT
None