ExperimentSetReplicate

ExperimentSet4DNES4HVMY8W
released

in situ Hi-C on DP2 thymocytes from tcf-1 KO CRE induced mice

   October 18th, 2022 at 3:56pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
primary cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: Arima - A1, A2

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES4HVMY8W
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI75BOOVL
483.07m
52.932%
25.398%
21.67%
File
Contact List-replicate (pairs)
4DNFI6VHKDU8
483.07m
52.932%
25.398%
21.67%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES4HVMY8W
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI5W3H7QI
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
File
Alignments (bam)
4DNFI53DJ4YD
729.88m
6.931%
19.932%
5.209%
1.743%
0.087%