ExperimentSetReplicate

ExperimentSet4DNES42T87S8
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 2 - 2 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HeLa-S3
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES42T87S8
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI34HSIE6
62.47m
51.047%
20.935%
28.017%
Experiment
4DNEXFMSGYJU
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFI1YFIY1A
62.47m
51.047%
20.935%
28.017%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXFMSGYJU
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIPFGH3H9
120.46m
15.161%
24.46%
8.511%
0.007%
0.182%