ExperimentSetReplicate

ExperimentSet4DNES425UDGS
released
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HiC from immediate neuronal precursors

   March 19th, 2018 at 8:04pm
Source Publication
LHX2- and LDB1-mediated trans interactions regulate olfactory receptor choice.
Monahan K, Horta A, et al., Nature 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
immediate neuronal precursor cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES425UDGS
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI1QBCSKR
618.88m
46.46%
19.594%
33.946%
Experiment
4DNEXKO3TRJT
Bio Rep 1, Tec Rep 1
in situ Hi-C on immediate neuronal precursor cell with DpnII
File
Contact List-replicate (pairs)
4DNFIDFRSE2G
251.02m
44.638%
16.843%
38.519%
Experiment
4DNEXTDMNUOO
Bio Rep 2, Tec Rep 1
in situ Hi-C on immediate neuronal precursor cell with DpnII
File
Contact List-replicate (pairs)
4DNFIBO9M2WY
367.86m
47.703%
21.472%
30.825%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES425UDGS
Multiple Experiments
File
Contact Matrix (mcool)
4DNFICUQ1N7S
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXKO3TRJT
Bio Rep 1, Tec Rep 1
in situ Hi-C on immediate neuronal precursor cell with DpnII
File
Alignments (bam)
4DNFI1J4UTL9
486.64m
9.487%
20.318%
9.828%
8.785%
0.091%
Experiment
4DNEXTDMNUOO
Bio Rep 2, Tec Rep 1
in situ Hi-C on immediate neuronal precursor cell with DpnII
File
Alignments (bam)
4DNFIG3CTKZC
654.12m
12.127%
18.116%
4.714%
8.806%
0.082%