ExperimentSetReplicate

ExperimentSet4DNES3WD7MCQ
released
View JSON

Hi-C on Foxp3 Treg precursor cells isolated from thymus

   May 2nd, 2023 at 9:13pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Treg Precursor cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES3WD7MCQ
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIPZ3GXLZ
36.11m
61.853%
16.196%
21.951%
Experiment
4DNEXIM5TOYX
Bio Rep 1, Tec Rep 1
in situ Hi-C on Treg Precursor cell with MboI
File
Contact List-replicate (pairs)
4DNFI1S4LCPO
19.39m
61.793%
16.314%
21.893%
Experiment
4DNEXKYOZ7HF
Bio Rep 2, Tec Rep 1
in situ Hi-C on Treg Precursor cell with MboI
File
Contact List-replicate (pairs)
4DNFIK368KP6
16.72m
61.922%
16.059%
22.018%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES3WD7MCQ
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIYRENYO8
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXIM5TOYX
Bio Rep 1, Tec Rep 1
in situ Hi-C on Treg Precursor cell with MboI
File
Alignments (bam)
4DNFI96D76SP
29.81m
4.97%
10.963%
9.232%
9.792%
0.127%
Experiment
4DNEXKYOZ7HF
Bio Rep 2, Tec Rep 1
in situ Hi-C on Treg Precursor cell with MboI
File
Alignments (bam)
4DNFIDCLNZB9
25.41m
4.963%
11.095%
8.494%
9.65%
0.129%