ExperimentSetReplicate

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

ExperimentSet4DNES3SP91X9
released
View JSON

Replicates of RNA-seq on CRISPR/cas9-modified Patski cells (Del-hinge clone a)

   February 6th, 2018 at 9:57pm
Source Publication
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.
Bonora G, Deng X, et al., Nature communications 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
Patski
Experiment Type(s) 
RNA-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
None

4 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
Experiment
4DNEXFBY2T4Y
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
4DNFIKKR5LWM
read positions (bam)
7 GB
File
4DNFIUCOIIMB
read counts (bw)
240.32 MB
File
4DNFIPI6CK31
gene expression (tsv)
11.6 MB
File
4DNFIZABUAWW
isoform expression (tsv)
23.65 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXFBY2T4Y
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Read Positions (bam)
4DNFIKKR5LWM
141.63m
124.7m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXFBY2T4Y
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Gene Expression (tsv)
4DNFIPI6CK31
121.11m
27.06k