ExperimentSetReplicate

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ExperimentSet4DNES2SIPWIT
released
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RNA-seq on wild-type WTC-11 iPSC cells differentiated for 4 days to ventricular cardiac myocytes.

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiogenic mesoderm
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

12 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Experiment
4DNEXCSK9GVS
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
4DNFIA4Q2KMM
read positions (bam)
3.49 GB
File
4DNFIVX3H36Y
read counts (bw)
220.32 MB
File
4DNFIXFOO7DZ
gene expression (tsv)
10.57 MB
File
4DNFI68SGG12
isoform expression (tsv)
30.03 MB
Experiment
4DNEX3MRPY4Y
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
4DNFIRTP442N
read positions (bam)
4.37 GB
File
4DNFIDY2B4WB
read counts (bw)
253.16 MB
File
4DNFIEAH1J3V
gene expression (tsv)
10.57 MB
File
4DNFIX4LSVB3
isoform expression (tsv)
30.05 MB
Experiment
4DNEX1IG2MQ2
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
4DNFIC4HZQ9D
read positions (bam)
3.31 GB
File
4DNFI6NOZEC5
read counts (bw)
196.21 MB
File
4DNFI4H33919
gene expression (tsv)
10.57 MB
File
4DNFIFS2O5JL
isoform expression (tsv)
30.04 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXCSK9GVS
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Read Positions (bam)
4DNFIA4Q2KMM
48.54m
42.2m
Experiment
4DNEX3MRPY4Y
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Read Positions (bam)
4DNFIRTP442N
60.92m
52.74m
Experiment
4DNEX1IG2MQ2
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Read Positions (bam)
4DNFIC4HZQ9D
45.6m
39.35m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXCSK9GVS
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Gene Expression (tsv)
4DNFIXFOO7DZ
19.18m
64
Experiment
4DNEX3MRPY4Y
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Gene Expression (tsv)
4DNFIEAH1J3V
23.1m
114
Experiment
4DNEX1IG2MQ2
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiogenic mesoderm
File
Gene Expression (tsv)
4DNFI4H33919
20.2m
161