ExperimentSetReplicate

ExperimentSet4DNES2KX6HQ5
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Chromatin tracing (ORCA) of a 3-Mb region at the chr6 locus in mESC CTCF-AID + auxin

   March 17th, 2023 at 9:29pm
Source Publication
Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A, Park M, et al., Molecular cell 2023

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with CTCF-AID
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
  1. Target: 3-Mb chr6 (mouse)
  2. Target: 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
Channel
Path
 
ch02
3-Mb chr6 (mouse) targeted by oligo probe library, readout oligo library (with Cy5-labeled imaging oligos)
ch01
3-Mb chr6 (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

10 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXGPCGGM9
Bio Rep 1, Tec Rep 1
multiplexed FISH on ES-E14TG2a with CTCF-AID
File
4DNFIJYFR8FT
FOF-CT - DNA-spot/trace core (csv)
9.88 MB
File
4DNFI7VT6EDW
FOF-CT - spot quality (csv)
2.81 MB
File
4DNFIEND7YNH
FOF-CT - trace data (csv)
41.27 kB
Experiment
4DNEXZFUSZYX
Bio Rep 1, Tec Rep 2
multiplexed FISH on ES-E14TG2a with CTCF-AID
File
4DNFIIOVHG1I
FOF-CT - DNA-spot/trace core (csv)
12.73 MB
File
4DNFIAIAP297
FOF-CT - spot quality (csv)
3.62 MB
File
4DNFIOFHHXW9
FOF-CT - trace data (csv)
58.23 kB
Experiment
4DNEXERBJAP8
Bio Rep 2, Tec Rep 1
multiplexed FISH on ES-E14TG2a with CTCF-AID
File
4DNFI4VLY3WU
FOF-CT - DNA-spot/trace core (csv)
8.83 MB
File
4DNFIVRJ7X2O
FOF-CT - spot quality (csv)
2.43 MB
File
4DNFIJR6TTC5
FOF-CT - trace data (csv)
49.21 kB
File
4DNFI1TKC3I2
FOF-CT - cell data (csv)
69.03 kB