ExperimentSetReplicate

ExperimentSet4DNES2H8V8YZ
released
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Hi-C on Wild-type Treg cells isolated from thymus - genotype CD45+CD4+CD8-CD25+Foxp3-Thy1.1+

   May 2nd, 2023 at 9:14pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Treg - thymus - Foxp3-Thy1.1 WT
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES2H8V8YZ
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIMGDDBIY
159.69m
57.851%
18.87%
23.279%
Experiment
4DNEX9FENEXP
Bio Rep 1, Tec Rep 1
in situ Hi-C on Treg - thymus - Foxp3-Thy1.1 WT with MboI
File
Contact List-replicate (pairs)
4DNFIIQL6WGR
76.43m
57.648%
18.911%
23.441%
Experiment
4DNEX3ZMYQVJ
Bio Rep 2, Tec Rep 1
in situ Hi-C on Treg - thymus - Foxp3-Thy1.1 WT with MboI
File
Contact List-replicate (pairs)
4DNFIQCSO2GM
83.26m
58.036%
18.833%
23.131%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES2H8V8YZ
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIUF4DI8Z
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX9FENEXP
Bio Rep 1, Tec Rep 1
in situ Hi-C on Treg - thymus - Foxp3-Thy1.1 WT with MboI
File
Alignments (bam)
4DNFII5ZUWVI
110.7m
4.715%
11.069%
7.561%
7.612%
0.138%
Experiment
4DNEX3ZMYQVJ
Bio Rep 2, Tec Rep 1
in situ Hi-C on Treg - thymus - Foxp3-Thy1.1 WT with MboI
File
Alignments (bam)
4DNFIH1EWPAC
121.94m
4.811%
10.982%
8.134%
7.795%
0.134%