ExperimentSetReplicate

ExperimentSet4DNES2AHLK4O
released
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in situ Hi-C on synchronyzed HeLa cells - Replicate 1 - 0.5 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication
A chromosome folding intermediate at the condensin-to-cohesin transition during telophase.
Abramo K, Valton AL, et al., Nature cell biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HeLa-S3
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES2AHLK4O
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIIBSQIYH
33.57m
46.763%
23.087%
30.151%
Experiment
4DNEX1UP3M9Y
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFIOTCUTKP
33.57m
46.763%
23.087%
30.151%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES2AHLK4O
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIZ2QDSKH
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX1UP3M9Y
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIKDABEP8
78.15m
15.53%
24.869%
16.635%
0.007%
0.17%