ExperimentSetReplicate

ExperimentSet4DNES265ETYQ
released
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in situ Hi-C on primary mouse Sertoli cells from 7 day old males

   June 2nd, 2021 at 5:26pm
Source Publication
The conserved sex regulator DMRT1 recruits SOX9 in sexual cell fate reprogramming.
Lindeman RE, Murphy MW, et al., Nucleic acids research 2021

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Sertoli cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: Arima - A1, A2

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES265ETYQ
Multiple Experiments
File
Contact List-combined (pairs)
4DNFILTSAY9I
589.08m
52.773%
30.533%
16.694%
Experiment
4DNEXMNJ6A2Y
Bio Rep 1, Tec Rep 1
in situ Hi-C on Sertoli cell with Arima - A1, A2
File
Contact List-replicate (pairs)
4DNFIAHA9Q1B
291.82m
53.778%
29.915%
16.307%
Experiment
4DNEX99DGLEF
Bio Rep 2, Tec Rep 1
in situ Hi-C on Sertoli cell with Arima - A1, A2
File
Contact List-replicate (pairs)
4DNFIGA7F8K9
297.26m
51.787%
31.14%
17.073%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES265ETYQ
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIB7RFFBB
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXMNJ6A2Y
Bio Rep 1, Tec Rep 1
in situ Hi-C on Sertoli cell with Arima - A1, A2
File
Alignments (bam)
4DNFI17EU7ZH
521.4m
9.074%
8.951%
11.34%
14.668%
0.061%
Experiment
4DNEX99DGLEF
Bio Rep 2, Tec Rep 1
in situ Hi-C on Sertoli cell with Arima - A1, A2
File
Alignments (bam)
4DNFIABW2TRH
544.78m
9.346%
8.024%
10.486%
17.58%
0.066%