ExperimentSetReplicate

ExperimentSet4DNES23G2JHL
released
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Replicates of in situ Hi-C on heterozygous Crispr modified TBX5 with 2 bp insertion causing frameshift WTC-11 iPSC cells differentiated for 23 days to cardiac myocytes.

   August 18th, 2022 at 9:14pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Enzyme: Arima - A1, A2

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNES23G2JHL
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIRTGD8GK
1.3 billion
48.604%
30.669%
20.727%
Experiment
4DNEXQP66T1Q
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with Arima - A1, A2
File
Contact List-replicate (pairs)
4DNFIDL6OF13
651.56m
47.83%
29.661%
22.509%
Experiment
4DNEXID6UAQD
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with Arima - A1, A2
File
Contact List-replicate (pairs)
4DNFIXWOX8BW
647.66m
49.384%
31.682%
18.934%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES23G2JHL
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIO73IAII
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQP66T1Q
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with Arima - A1, A2
File
Alignments (bam)
4DNFIGTSNUVX
1.19 billion
4.634%
7.2%
21.899%
11.739%
0.237%
Experiment
4DNEXID6UAQD
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle cell with Arima - A1, A2
File
Alignments (bam)
4DNFI1Y3Q39Z
1.2 billion
4.665%
7.14%
22.774%
11.473%
0.193%