ExperimentSetReplicate

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ExperimentSet4DNES228OAL3
released
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WAPL ChIP-seq on WT hTert-RPE-1

   October 18th, 2024 at 1:48pm
Source Publication
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation
Popay TM, Pant A, et al., bioRxiv 2024

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
RPE-hTERT (Tier 2)
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: WAPL protein

4 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
From Multiple Experiments
4DNES228OAL3
Multiple Experiments
File
4DNFI1XJP3JI
peaks (bigbed)
232.66 kB
File
4DNFI6S9XWWY
conservative peaks (bigbed)
232.66 kB
File
4DNFI9EAGU48
signal fold change (bw)
1.2 GB
Experiment
4DNEXF1J8NAZ
Bio Rep 1, Tec Rep 1
ChIP-seq against WAPL protein on RPE-hTERT (Tier 2)
File
4DNFI876W1P6
read positions (bed)
518.87 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXF1J8NAZ
Bio Rep 1, Tec Rep 1
ChIP-seq against WAPL protein on RPE-hTERT (Tier 2)
File
Read Positions (bed)
4DNFI876W1P6
0.75
0.73
31.09m