ExperimentSetReplicate

ExperimentSet4DNES228B63X
released
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in situ Hi-C on primary cardiomyocytes from the left ventricle - donor 01176

   April 20th, 2023 at 9:45am
Source Publication
Detailed Regulatory Interaction Map of the Human Heart Facilitates Gene Discovery for Cardiovascular Disease
Bianchi V, Geeven G, et al., bioRxiv 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
tissue
Sample 
heart left ventricle
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES228B63X
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIPKHAVEK
560m
39.379%
23.406%
37.214%
Experiment
4DNEX1521QZP
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Contact List-replicate (pairs)
4DNFI3FDAD3Y
177.23m
39.473%
23.429%
37.098%
Experiment
4DNEXE7AUJKM
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Contact List-replicate (pairs)
4DNFILCHZER2
382.77m
39.336%
23.396%
37.268%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES228B63X
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIW6ICDVM
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX1521QZP
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Alignments (bam)
4DNFIRKEIRX5
331.75m
12.458%
24.456%
9.478%
0.186%
0.267%
Experiment
4DNEXE7AUJKM
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Alignments (bam)
4DNFIQ44V4RE
662.79m
12.421%
19.486%
6.014%
4.327%
0.293%