ExperimentSetReplicate

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ExperimentSet4DNES1ZCV8UF
released
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ATAC-seq on HEK293 cells - 30min after light Cas9-AluGG cgRNA (vfCRISPR)

   February 14th, 2022 at 3:09am
Source Publication
Massively parallel genomic perturbations with multi-target CRISPR interrogates Cas9 activity and DNA repair at endogenous sites.
Zou RS, Marin-Gonzalez A, et al., Nature cell biology 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HEK293 (Tier 2)
Experiment Type(s) 
ATAC-seq
Modification Type 
None
Treatment Type 
  1. Transient Transfection
  2. Light
Assay Details 
None

5 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
From Multiple Experiments
4DNES1ZCV8UF
Multiple Experiments
File
4DNFI5TIVE7X
peaks (bigbed)
10.16 MB
File
4DNFI5ILNIKR
conservative peaks (bigbed)
10.08 MB
File
4DNFID7513WF
signal fold change (bw)
2.09 GB
Experiment
4DNEX8RK68W9
Bio Rep 1, Tec Rep 1
ATAC-seq on HEK293 (Tier 2)
File
4DNFIZR7KHFR
read positions (bed)
1002.47 MB
Experiment
4DNEXSV59ZJT
Bio Rep 2, Tec Rep 1
ATAC-seq on HEK293 (Tier 2)
File
4DNFIPRW2QSM
read positions (bed)
1.02 GB

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEX8RK68W9
Bio Rep 1, Tec Rep 1
ATAC-seq on HEK293 (Tier 2)
File
Read Positions (bed)
4DNFIZR7KHFR
6.34%
0.91
0.93
62.79m
Experiment
4DNEXSV59ZJT
Bio Rep 2, Tec Rep 1
ATAC-seq on HEK293 (Tier 2)
File
Read Positions (bed)
4DNFIPRW2QSM
7.51%
0.91
0.92
65.21m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNES1ZCV8UF
Multiple Experiments
File
Peaks (bigbed)
4DNFI5TIVE7X
225.03k
1.01
1.01
0.36