ExperimentSetReplicate

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

ExperimentSet4DNES1SEKXBH
released
View JSON

RNA-seq on wild-type WTC-11 iPSC cells differentiated for 6 days to ventricular cardiac myocytes.

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to primitive cardiac myocyte
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

12 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
Experiment
4DNEXAR9M3DO
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
4DNFIPRWLUF9
read positions (bam)
3.45 GB
File
4DNFI3HSHB43
read counts (bw)
218.52 MB
File
4DNFIZ7C181Q
gene expression (tsv)
10.56 MB
File
4DNFIMEUUJ5Z
isoform expression (tsv)
30.03 MB
Experiment
4DNEX3JTNRGC
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
4DNFIH364TU3
read positions (bam)
3.87 GB
File
4DNFI5BB9YAI
read counts (bw)
196.09 MB
File
4DNFIRIQCI77
gene expression (tsv)
10.58 MB
File
4DNFIBMY3XH3
isoform expression (tsv)
30.08 MB
Experiment
4DNEXV88PLZK
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
4DNFIM477GIC
read positions (bam)
3.78 GB
File
4DNFIW1EQ811
read counts (bw)
194.83 MB
File
4DNFI6C6QT3H
gene expression (tsv)
10.59 MB
File
4DNFIZYRLSLO
isoform expression (tsv)
30.07 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXAR9M3DO
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
Read Positions (bam)
4DNFIPRWLUF9
49.67m
43.51m
Experiment
4DNEX3JTNRGC
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
Read Positions (bam)
4DNFIH364TU3
53.92m
46.26m
Experiment
4DNEXV88PLZK
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
Read Positions (bam)
4DNFIM477GIC
54.29m
47.02m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXAR9M3DO
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
Gene Expression (tsv)
4DNFIZ7C181Q
18.3m
89
Experiment
4DNEX3JTNRGC
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
Gene Expression (tsv)
4DNFIRIQCI77
21.39m
102
Experiment
4DNEXV88PLZK
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to primitive cardiac myocyte
File
Gene Expression (tsv)
4DNFI6C6QT3H
24.22m
64