ExperimentSetReplicate

ExperimentSet4DNES1ONB8TD
released

Replicates of Hi-C on H9 hESC cells, containing a MYL2-H2B-GFP marker for cardiocytes, at day 5 differentiation - cardiac mesoderm.

   August 7th, 2019 at 5:53pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
H9 with targeted integration of GFP-tagged MYL2 differentiated to cardiogenic mesoderm
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES1ONB8TD
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIOI2JZ92
2.44 billion
48.485%
20.231%
31.283%
File
Contact List-replicate (pairs)
4DNFI34H3MM5
1.17 billion
49.242%
18.249%
32.509%
File
Contact List-replicate (pairs)
4DNFIRIGKYEG
1.28 billion
47.793%
22.045%
30.163%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
File
Alignments (bam)
4DNFIPYJRN8D
1.93 billion
8.38%
12.038%
13.722%
5.259%
0.113%
File
Alignments (bam)
4DNFIAQHJUCT
2.15 billion
8.227%
11.223%
16.478%
4.766%
0.093%