ExperimentSetReplicate

ExperimentSet4DNES1ONB8TD
released

Replicates of Hi-C on H9 hESC cells, containing a MYL2-H2B-GFP marker for cardiocytes, at day 5 differentiation - cardiac mesoderm.

   August 7th, 2019 at 5:53pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
in vitro differentiated cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES1ONB8TD
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIOI2JZ92
2.44 billion
48.485%
20.231%
31.283%
File
Contact List-replicate (pairs)
4DNFI34H3MM5
1.17 billion
49.242%
18.249%
32.509%
File
Contact List-replicate (pairs)
4DNFIRIGKYEG
1.28 billion
47.793%
22.045%
30.163%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNES1ONB8TD
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIRO3DQCO
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
File
Alignments (bam)
4DNFIPYJRN8D
1.93 billion
8.38%
12.038%
13.722%
5.259%
0.113%
File
Alignments (bam)
4DNFIAQHJUCT
2.15 billion
8.227%
11.223%
16.478%
4.766%
0.093%