ExperimentSetReplicate

ExperimentSet4DNES1MPPNUZ
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Multiplexed FISH fine-scale in lung alveolar type 2 (AT2) cells from wild-type mouse

   May 27th, 2025 at 5:42pm
Source Publication
Tracing the evolution of single-cell cancer 3D genomes: an atlas for cancer gene discovery.
Liu M, Jin S, et al., bioRxiv : the preprint server for biology 2024

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
AT2 from mouse SA5258 (fine-scale)
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, mouse region
Channel
Imaging Rounds
Path
 
ch00
0
Yellow-green fiducial beads for drift correction
ch01
0
Chromosomes targeted by DAPI
ch02
1-50
40 consecutive 5-kb to 20-kb loc in each of the 10 genes targeted by Alexa fluor 647 imaging oligos
ch03
1-50
40 consecutive 5-kb to 20-kb loci in each of the 10 genes targeted by Atto 560 imaging oligos
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1 Processed File

Experiment
File
File Type
File Size
Experiment
4DNEXTENN7WL
Bio Rep 1, Tec Rep 1
multiplexed FISH on AT2 from mouse SA5258 (fine-scale)
File
4DNFIEC1D26L
FOF-CT - DNA-spot/trace core (csv)
159.89 MB