ExperimentSetReplicate

ExperimentSet4DNES1IV21NR
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Set of Inputs for DDX39B TSA-seq version 2 Reaction Condition 3' (PBS 50% Sucrose plus 1.5 mM DTT) 30 minute Reaction on HCT116 cells

   December 18th, 2024 at 8:32pm
Source Publication
Highly active chromosome regions preferentially associate with two perispeckle networks that partition the interchromatin space
Venkata NC, Kim J, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HCT116 (Tier 2)
Experiment Type(s) 
TSA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: DDX39B protein

2 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBSDV7B4VL
Bio Replicate 1
Experiment
4DNEXRW8HB51
Tech Replicate 1
File
File
4DNFIXE3JTV6
3.62 GB
100
  Pass
91.66m
Biosample
4DNBSU2F64A2
Bio Replicate 2
Experiment
4DNEX8QC7GJ3
Tech Replicate 1
File
File
4DNFINKQ4WLI
1.76 GB
100
  Pass
44.8m