ExperimentSetReplicate

ExperimentSet4DNES1INHSG7
released

Replicates of Hi-C on H9 hESC cells, containing a MYL2-H2B-GFP marker for cardiocytes, at day 0 differentiation - undifferentiated.

   August 7th, 2019 at 5:53pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
H9 with targeted integration of GFP-tagged MYL2
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNES1INHSG7
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIF8815WO
2.25 billion
57.91%
22.42%
19.67%
File
Contact List-replicate (pairs)
4DNFIAOXOR6N
966.1m
57.205%
23.54%
19.255%
File
Contact List-replicate (pairs)
4DNFIIG9A6PD
1.28 billion
58.44%
21.577%
19.982%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
File
Alignments (bam)
4DNFIY89DBOK
1.5 billion
8.902%
10.987%
10.886%
4.908%
0.071%
File
Alignments (bam)
4DNFIRGUR82F
2.1 billion
8.751%
11.008%
14.203%
4.839%
0.07%