ExperimentSetReplicate

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ExperimentSet4DNES17YTSSG
released
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Replicates of RNA-seq on subclone 2-4 of Patski wild-type cells

   February 6th, 2018 at 9:57pm
Source Publication
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.
Bonora G, Deng X, et al., Nature communications 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
Patski
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

8 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Experiment
4DNEXLX79NPB
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
4DNFIEEZO3T7
read positions (bam)
6.09 GB
File
4DNFIY6VGJRE
read counts (bw)
170.38 MB
File
4DNFICXIDJYM
gene expression (tsv)
11.54 MB
File
4DNFILGR8Q3P
isoform expression (tsv)
23.54 MB
Experiment
4DNEX8UJB6DB
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
4DNFI2YBO4P1
read positions (bam)
6.68 GB
File
4DNFIO9HKDJR
read counts (bw)
177.49 MB
File
4DNFI9W9KBCC
gene expression (tsv)
11.55 MB
File
4DNFIN8UZXFP
isoform expression (tsv)
23.55 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXLX79NPB
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Read Positions (bam)
4DNFIEEZO3T7
74.08m
64.95m
Experiment
4DNEX8UJB6DB
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
Read Positions (bam)
4DNFI2YBO4P1
81.14m
71.2m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXLX79NPB
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Gene Expression (tsv)
4DNFICXIDJYM
50.98m
135.64k
Experiment
4DNEX8UJB6DB
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
Gene Expression (tsv)
4DNFI9W9KBCC
55.85m
157.41k