ExperimentSetReplicate

ExperimentSet4DNESWC8XDNG
replaced

Replicates of CUT&RUN on K562 cells using H3K4me2 (Upstate 07-030) with a digestion time of 3min

   February 23rd, 2018 at 8:44am

Note: Replaced Item - 4DNESWC8XDNG  


This experiment set was replaced by 4DNES5KUU6OY because existing sets from the same line and using the same antibody that differed only in reaction time (a variable determined to not qualitatively affect the results) were merged into a single replicate set. In addition, new biological replicates were added.

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: H3K4me2

5 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXZUFAK2G
Bio Rep 1, Tec Rep 1
CUT&RUN against H3K4me2 on K562 (Tier 2)
read positions (bam)
2.95 GB
File
no view permissions
-
Experiment
4DNEXERG7TH2
Bio Rep 2, Tec Rep 1
CUT&RUN against H3K4me2 on K562 (Tier 2)
read positions (bam)
3 GB
File
no view permissions
-
Experiment
4DNEX1YDKYUO
Bio Rep 3, Tec Rep 1
CUT&RUN against H3K4me2 on K562 (Tier 2)
read positions (bam)
7.34 GB
File
no view permissions
-
Experiment
4DNEXWWYU2FY
Bio Rep 4, Tec Rep 1
CUT&RUN against H3K4me2 on K562 (Tier 2)
read positions (bam)
6.64 GB
File
no view permissions
-