Included Properties
Data Type
Project
Lab
Experiment Category
Experiment Type
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Organ/System
Tissue Source
Publication
Modifications
Treatments
Assay Details
Center
Status
Commendations
Warnings
1 Common Properties
Set Type
Replicate
2747 Results
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
Knock-out of Kat6b
Target
101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
FKBP12(F36V) degron targeting Rad21 (control)
Target
101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
FKBP12(F36V) degron targeting Rad21 treated with dtag
Target
101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
FKBP12(F36V) degron targeting CTCF with 12hr treatment of A485 + 6hr recovery (control)
Target
101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
FKBP12(F36V) degron targeting CTCF with 12hr treatment of A485 (control)
Target
101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
FKBP12(F36V) degron targeting CTCF in 24hr differentiation media (control)
Target
101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
FKBP12(F36V) degron targeting CTCF (control)
Target
101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
FKBP12(F36V) degron targeting CTCF treated with dtag with 12hr treatment of A485 + 6hr recovery
Target
101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
FKBP12(F36V) degron targeting CTCF treated with dtag with 12hr treatment of A485
Target
101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
FKBP12(F36V) degron targeting CTCF treated with dtag in 24hr differentiation media
Target
101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
FKBP12(F36V) degron targeting CTCF treated with dtag
Target
101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
ChIP-seq
WTC-11 differentiated to cardiac muscle cell
WTC-11 differentiated to cardiac muscle cell
CTCF input on an allelic series of iPSCs 20 day differentiatiation to cardiac cells - TBX5 homozygous (compound heterozygous)
Target
None (Control)
ChIP-seq
WTC-11 differentiated to cardiac muscle cell
WTC-11 differentiated to cardiac muscle cell
CTCF input on an allelic series of iPSCs 20 day differentiatiation to cardiac cells - TBX5 heterozygous
Target
None (Control)
ChIP-seq
WTC-11 differentiated to cardiac muscle cell
WTC-11 differentiated to cardiac muscle cell
CTCF input on an allelic series of iPSCs 20 day differentiatiation to cardiac cells - WT
Target
None (Control)
ChIP-seq
WTC-11 differentiated to cardiac muscle cell
WTC-11 differentiated to cardiac muscle cell
atrial differentiation 45 days TBX5 input
Target
None (Control)
ChIP-seq
WTC-11 differentiated to cardiac muscle cell
WTC-11 differentiated to cardiac muscle cell
atrial differentiation 20 days TBX5 input
Target
None (Control)
ChIP-seq
WTC-11 differentiated to cardiac muscle cell
WTC-11 differentiated to cardiac muscle cell
atrial differentiation 11 days TBX5 input
Target
None (Control)
single cell Methyl Hi-C
WTC-11 differentiated to cardiac muscle cell
snm-3C on WTC-11 cardiac differentiation TBX5 allelic series
atrial 20 days - TBX5 hemizygous
-
single cell Methyl Hi-C
WTC-11 differentiated to cardiac muscle cell
snm-3C on WTC-11 cardiac differentiation TBX5 allelic series
atrial 20 days - TBX5 heterozygous
-
single cell Methyl Hi-C
WTC-11 differentiated to cardiac muscle cell
snm-3C on WTC-11 cardiac differentiation TBX5 allelic series
atrial 20 days - unmutated
-
single cell Methyl Hi-C
WTC-11 differentiated to cardiac muscle cell
snm-3C on WTC-11 cardiac differentiation timecourse
ventricular - 23 days
-
single cell Methyl Hi-C
WTC-11 differentiated to primitive cardiac myocyte
snm-3C on WTC-11 cardiac differentiation timecourse
ventricular - 6 days
-
single cell Methyl Hi-C
WTC-11 differentiated to cardiac muscle cell
snm-3C on WTC-11 cardiac differentiation timecourse
atrial - 45 days
-
single cell Methyl Hi-C
WTC-11 differentiated to primitive cardiac myocyte
snm-3C on WTC-11 cardiac differentiation timecourse
atrial - 6 days
-
single cell Methyl Hi-C
WTC-11
snm-3C on WTC-11 cardiac differentiation timecourse
undifferentiated
-