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Data Type
  • ExperimentSetReplicate2750
    • Project
    Lab
    Experiment Category
    Experiment Type
    Dataset
    Organism
    Sample Type
    Sample Tier
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Publication
    Modifications
    Treatments
    Assay Details
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    1 Common Properties
     Set Type
    Replicate
    2750 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESJ15KEBD
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    Knock-out of Kat6b
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESQD7KQVS
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting Rad21 (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESTLJOO1C
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting Rad21 treated with dtag
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESE2MH977
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF with 12hr treatment of A485 + 6hr recovery (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNES2LZ7D8W
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF with 12hr treatment of A485 (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESG53SEUU
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF in 24hr differentiation media (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESX8IACI3
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF (control)
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESKBC3QBS
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag with 12hr treatment of A485 + 6hr recovery
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNES9946GB9
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag with 12hr treatment of A485
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNES3QUSY1F
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag in 24hr differentiation media
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESI7RG1SM
    multiplexed FISH
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag
    Target
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    Bing Ren, UCSD
    4DNESZKHN4WZ
    ChIP-seq
    WTC-11 differentiated to cardiac muscle cell
    WTC-11 differentiated to cardiac muscle cell
    CTCF input on an allelic series of iPSCs 20 day differentiatiation to cardiac cells - TBX5 homozygous (compound heterozygous)
    Target
    None (Control)
    Benoit Bruneau, UCSF
    4DNESM6WTYV3
    ChIP-seq
    WTC-11 differentiated to cardiac muscle cell
    WTC-11 differentiated to cardiac muscle cell
    CTCF input on an allelic series of iPSCs 20 day differentiatiation to cardiac cells - TBX5 heterozygous
    Target
    None (Control)
    Benoit Bruneau, UCSF
    4DNESHTBSW8J
    ChIP-seq
    WTC-11 differentiated to cardiac muscle cell
    WTC-11 differentiated to cardiac muscle cell
    CTCF input on an allelic series of iPSCs 20 day differentiatiation to cardiac cells - WT
    Target
    None (Control)
    Benoit Bruneau, UCSF
    4DNESTJ9FHDL
    ChIP-seq
    WTC-11 differentiated to cardiac muscle cell
    WTC-11 differentiated to cardiac muscle cell
    atrial differentiation 45 days TBX5 input
    Target
    None (Control)
    Benoit Bruneau, UCSF
    4DNESZTHVFJ7
    ChIP-seq
    WTC-11 differentiated to cardiac muscle cell
    WTC-11 differentiated to cardiac muscle cell
    atrial differentiation 20 days TBX5 input
    Target
    None (Control)
    Benoit Bruneau, UCSF
    4DNESY4L3IVU
    ChIP-seq
    WTC-11 differentiated to cardiac muscle cell
    WTC-11 differentiated to cardiac muscle cell
    atrial differentiation 11 days TBX5 input
    Target
    None (Control)
    Benoit Bruneau, UCSF
    4DNESOOH7CIO
    single cell Methyl Hi-C
    WTC-11 differentiated to cardiac muscle cell
    snm-3C on WTC-11 cardiac differentiation TBX5 allelic series
    atrial 20 days - TBX5 hemizygous
    -
    Benoit Bruneau, UCSF
    4DNESQ5KJOZB
    single cell Methyl Hi-C
    WTC-11 differentiated to cardiac muscle cell
    snm-3C on WTC-11 cardiac differentiation TBX5 allelic series
    atrial 20 days - TBX5 heterozygous
    -
    Benoit Bruneau, UCSF
    4DNES46RZHBX
    single cell Methyl Hi-C
    WTC-11 differentiated to cardiac muscle cell
    snm-3C on WTC-11 cardiac differentiation TBX5 allelic series
    atrial 20 days - unmutated
    -
    Benoit Bruneau, UCSF
    4DNEST62GZIU
    single cell Methyl Hi-C
    WTC-11 differentiated to cardiac muscle cell
    snm-3C on WTC-11 cardiac differentiation timecourse
    ventricular - 23 days
    -
    Benoit Bruneau, UCSF
    4DNESQX3PJK4
    single cell Methyl Hi-C
    WTC-11 differentiated to primitive cardiac myocyte
    snm-3C on WTC-11 cardiac differentiation timecourse
    ventricular - 6 days
    -
    Benoit Bruneau, UCSF
    4DNESK5OKA29
    single cell Methyl Hi-C
    WTC-11 differentiated to cardiac muscle cell
    snm-3C on WTC-11 cardiac differentiation timecourse
    atrial - 45 days
    -
    Benoit Bruneau, UCSF
    4DNESFH239YE
    single cell Methyl Hi-C
    WTC-11 differentiated to primitive cardiac myocyte
    snm-3C on WTC-11 cardiac differentiation timecourse
    atrial - 6 days
    -
    Benoit Bruneau, UCSF
    4DNES7GHOB2H
    single cell Methyl Hi-C
    WTC-11
    snm-3C on WTC-11 cardiac differentiation timecourse
    undifferentiated
    -
    Benoit Bruneau, UCSF