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Properties

Sample Category
Assay Details
Warnings
16 Common Properties
 Project
4DN
 Lab
Lin Chen, USC
 Experiment Category
Sequencing
 Experiment Type
TCC
 Organism
Human
 Sample Type
immortalized cells
 Sample Tier
Tier 1
 Sample
GM12878 (Tier 1)
 Organ/System
immune system
 Tissue Source
B-lymphocyte
 Publication
Xu J et al. (2022) doi:10.1101/2022.02.03.478915
 Modifications
No value
 Treatments
No value
 Center
NOFIC - Alber
 Status
Released
 Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in vitro crosslinking, with SDS, NcoI digestion
Enzyme
NcoI
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in vitro crosslinking, with SDS, MboI digestion
Enzyme
MboI
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in situ crosslinking, without SDS treatment, without restriction digestion
-
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in situ crosslinking, with SDS treatment, without restriction digestion
-
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in vitro crosslinking, with SDS, with RNase A digestion, without HindIII digestion
-
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in vitro crosslinking, with SDS, without restriction digestion
-
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in vitro crosslinking, with SDS, HindIII digestion
Enzyme
HindIII
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