Included Properties
Data Type
Dataset
Sample Category
Assay Details
Set Type
Warnings
16 Common Properties
Project
4DN
Lab
Lin Chen, USC
Experiment Category
Sequencing
Experiment Type
Hi-C
Organism
Human
Sample Type
immortalized cells
Sample Tier
Tier 1
Sample
GM12878 (Tier 1)
Organ/System
immune system
Tissue Source
B-lymphocyte
Publication
Xu J et al. (2022) doi:10.1101/2022.02.03.478915
Modifications
No value
Treatments
No value
Center
NOFIC - Alber
Status
Released
Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in vitro crosslinking, with SDS, NcoI digestion
Enzyme
NcoI
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in vitro crosslinking, with SDS, MboI digestion
Enzyme
MboI
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in situ crosslinking, without SDS treatment, without restriction digestion
-
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in situ crosslinking, with SDS treatment, without restriction digestion
-
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in vitro crosslinking, with SDS, with RNase A digestion, without HindIII digestion
-
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in vitro crosslinking, with SDS, without restriction digestion
-
TCC
GM12878 (Tier 1)
cryomilling TCC protocol variations
in vitro crosslinking, with SDS, HindIII digestion
Enzyme
HindIII
- fin -