Data Browser
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Properties

Sample Category
Sample
Assay Details
Warnings
15 Common Properties
 Project
4DN
 Lab
Bing Ren, UCSD
 Experiment Category
Microscopy
 Experiment Type
multiplexed FISH
 Organism
Mouse
 Sample Type
stem cells
 Sample Tier
Unclassified
 Organ/System
No value
 Tissue Source
stem cell
 Publication
Huang H et al. (2021) PMID:34002095
 Modifications
RMCE
 Treatments
No value
 Center
NOFIC - Ren
 Status
Released
 Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site downstream of Sox2 SE
Chromatin Tracing of Sox2 and SE with engineered CTCF insertions
4 CTCF sites inserted downstream of both Sox2 and SE with Sox2 RNA FISH
Target
42 consecutive 5-kb loci on chr3 (mouse), Chromosomes, Sox2 mouse transcript, GFP transcript, mCherry transcript
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Chromatin Tracing of Sox2 and SE with engineered CTCF insertions
4 CTCF sites inserted between Sox2 and SE with Sox2 RNA FISH
Target
42 consecutive 5-kb loci on chr3 (mouse), Chromosomes, Sox2 mouse transcript, GFP transcript, mCherry transcript
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Chromatin Tracing of Sox2 and SE with engineered CTCF insertions
4 mutant CTCF sites inserted between Sox2 and SE
Target
42 consecutive 5-kb loci on chr3 (mouse), Chromosomes
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site downstream of Sox2 SE
Chromatin Tracing of Sox2 and SE with engineered CTCF insertions
4 CTCF sites inserted downstream of both Sox2 and SE
Target
42 consecutive 5-kb loci on chr3 (mouse), Chromosomes
multiplexed FISH
F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
Chromatin Tracing of Sox2 and SE with engineered CTCF insertions
4 CTCF sites inserted between Sox2 and SE
Target
42 consecutive 5-kb loci on chr3 (mouse), Chromosomes
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