Included Properties
Data Type
Lab
Experiment Type
Dataset
Sample
Publication
Assay Details
Center
Set Type
Warnings
12 Common Properties
Project
4DN
Experiment Category
Sequencing
Organism
Human
Sample Type
immortalized cells
Sample Tier
Tier 2
Sample Category
Tier 2
Organ/System
No value
Tissue Source
blood cell
Modifications
No value
Treatments
No value
Status
Released
Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
DamID-seq
HAP-1 (Tier 2)
DamID-seq on Hap1 cells (2020-07-01)
Dam-only control
Target
None (Control)
DamID-seq
HAP-1 (Tier 2)
DamID-seq on Hap1 cells (2020-07-01)
Nucleolar Targeting Signal (4X-AP3)-Dam
Target
Nucleolus Localization Sequence (4X-AP3D1) (engineered reagent)
pA-DamID
HAP-1 (Tier 2)
pADamID on Hap1
Dam control for normalization - G2 sorted cells
-
pA-DamID
HAP-1 (Tier 2)
pADamID on Hap1
Dam control for normalization - S sorted cells
-
pA-DamID
HAP-1 (Tier 2)
pADamID on Hap1
Dam control for normalization - G1 sorted cells
-
pA-DamID
HAP-1 (Tier 2)
pADamID on Hap1
LaminB2 antibody - G2 sorted cells
Target
LMNB2 protein
pA-DamID
HAP-1 (Tier 2)
pADamID on Hap1
LaminB2 antibody - S sorted cells
Target
LMNB2 protein
pA-DamID
HAP-1 (Tier 2)
pADamID on Hap1
LaminB2 antibody - G1 sorted cells
Target
LMNB2 protein
pA-DamID
HAP-1 (Tier 2)
pADamID on Hap1
H3K27me3 antibody
Target
H3K27me3
pA-DamID
HAP-1 (Tier 2)
pADamID on Hap1
LaminB2 antibody
Target
LMNB2 protein
pA-DamID
HAP-1 (Tier 2)
pADamID on Hap1
LaminB1 antibody
Target
LMNB1 protein
pA-DamID
HAP-1 (Tier 2)
pADamID on Hap1
Dam control for normalization
-
DamID-seq
HAP-1 (Tier 2)
DamID-seq on HAP-1 cells (2018-10-22)
Dam-only Control
Target
None (Control)
DamID-seq
HAP-1 (Tier 2)
DamID-seq on HAP-1 cells (2018-10-22)
LaminB1-Dam
Target
LMNB1 protein
sci-Hi-C
HAP-1 (Tier 2)
sci-Hi-C on five human cell lines - analyzed using topic modeling
HAP-1
Enzyme
DpnII
- fin -