7 fewer sets in 4DN-only Data.
Included Properties
Data Type
Dataset
Organ/System
Set Type
18 Common Properties
Project
External
Lab
Job Dekker, UMMS
Experiment Category
Sequencing
Experiment Type
Hi-C
Organism
Chicken
Sample Type
immortalized cells
Sample Tier
Unclassified
Sample Category
Other
Sample
DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
Tissue Source
bursa of Fabricius
Publication
Gibcus JH et al. (2018) PMID:29348367
Modifications
No value
Treatments
Chemical
Assay Details
Enzyme: HindIII
Center
External
Status
Released
Commendations
No value
Warnings
Biosample Metadata Incomplete
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
HiC on sync. CAPH-AID chicken cells
prometaphase block (60m), CAPH-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
HiC on sync. CAPH-AID chicken cells
prometaphase (30m), CAPH-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
HiC on sync. CAPH-AID chicken cells
prometaphase (15m), CAPH-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
HiC on sync. CAPH-AID chicken cells
prophase (10m), CAPH-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
HiC on sync. CAPH-AID chicken cells
prophase (8m), CAPH-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
HiC on sync. CAPH-AID chicken cells
G2 block (0m), CAPH-
Enzyme
HindIII
Dilution Hi-C
DT40 with random integration of GFP and AID-tagged CAP-H gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of CAP-H gene, CAP-H gene deletion
HiC on sync. CAPH-AID chicken cells
G2 block (0m), CAPH+
Enzyme
HindIII
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