Data Browser
Filter & browse experiments

10 fewer sets in 4DN-only Data.

Included Properties

Sample Type
Sample Category
Sample
Organ/System
Tissue Source
Treatments
Assay Details
Set Type
Warnings
11 Common Properties
 Project
External
 Lab
Alistair Boettiger, STANFORD
 Experiment Category
Microscopy
 Experiment Type
FISH
 Organism
Human
 Sample Tier
Unclassified
 Publication
Bintu B et al. (2018) PMID:30361340
 Modifications
No value
 Center
External
 Status
Released
 Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
multiplexed FISH
HCT116 with Crispr generated mClover and AID-tagged RAD21
Chromatin tracing of 2-Mb on chr21
Chr21:34-37 Mb in HCT116 cells cohesin-depleted after cell division
Target
83 consecutive 30-kb loci on chr21, Geminin, EdU labeled Chromosomes
multiplexed FISH
HCT116 with Crispr generated mClover and AID-tagged RAD21
Chromatin tracing of 2-Mb on chr21
Chr21:34-37 Mb in HCT116 cells cohesin-depleted
Target
83 consecutive 30-kb loci on chr21
multiplexed FISH
HCT116 with Crispr generated mClover and AID-tagged RAD21
Chromatin tracing of 2-Mb on chr21
Chr21:34-37 Mb in HCT116 cells
Target
83 consecutive 30-kb loci on chr21
multiplexed FISH
HCT116 with Crispr generated mClover and AID-tagged RAD21
Chromatin tracing of 2-Mb on chr21
Chr21:28-30 Mb in HCT116 cells cohesin-depleted
Target
65 consecutive 30-kb loci on chr21
multiplexed FISH
HCT116 with Crispr generated mClover and AID-tagged RAD21
Chromatin tracing of 2-Mb on chr21
Chr21:28-30 Mb in HCT116 cells
Target
65 consecutive 30-kb loci on chr21
multiplexed FISH
A549
Chromatin tracing of 2-Mb on chr21
Chr21:28-30 Mb in A549 cells
Target
65 consecutive 30-kb loci on chr21
multiplexed FISH
K562
Chromatin tracing of 2-Mb on chr21
Chr21:28-30 Mb in K562 cells
Target
65 consecutive 30-kb loci on chr21
multiplexed FISH
IMR-90
Chromatin tracing of 2-Mb on chr21
Chr21:28-30 Mb in IMR90 cells across cell cycle
Target
65 consecutive 30-kb loci on chr21, Geminin, Chromosomes
multiplexed FISH
IMR-90
Chromatin tracing of 2-Mb on chr21
Chr21:28-30 Mb in IMR90 cells
Target
65 consecutive 30-kb loci on chr21
multiplexed FISH
IMR-90
Chromatin tracing of 2-Mb on chr21
Chr21:18-20 Mb (no TADs) in IMR90 cells
Target
65 consecutive 30-kb loci in a region without TADs on chr21
- fin -