Included Properties
Data Type
Dataset
Sample
Organ/System
Set Type
Dataset Group
Warnings
16 Common Properties
Project
4DN
Lab
Jesse Dixon, SALK
Experiment Category
Sequencing
Experiment Type
Hi-C
Organism
Human
Sample Type
immortalized cells
Sample Tier
Unclassified
Sample Category
Tier 2
Tissue Source
retinal pigment epithelial cell
Publication
Popay TM et al. (2024) doi:10.1101/2024.10.02.616323
Modifications
No value
Treatments
Chemical
Assay Details
Enzyme: Arima - A1, A2
Center
OFHHD - Dixon
Status
Released
Commendations
No value
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
in situ Hi-C
dTAG-RAD21 hTERT-RPE-1 - clone B3
Hi-C on hTert-RPE1 with degron tagged RAD21
clone B3 unsynchronized 24 hr dTAG-v1
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-RAD21 hTERT-RPE-1 - clone B3
Hi-C on hTert-RPE1 with degron tagged RAD21
clone B3 unsynchronized 4 hr dTAG-v1
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-RAD21 hTERT-RPE-1 - clone B3
Hi-C on hTert-RPE1 with degron tagged RAD21
clone B3 unsynchronized 24 hr DMSO control
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-RAD21 hTERT-RPE-1 - clone B1
Hi-C on hTert-RPE1 with degron tagged RAD21
clone B1 unsynchronized 24 hr dTAG-v1
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-RAD21 hTERT-RPE-1 - clone B1
Hi-C on hTert-RPE1 with degron tagged RAD21
clone B1 unsynchronized 4 hr dTAG-v1
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-RAD21 hTERT-RPE-1 - clone B1
Hi-C on hTert-RPE1 with degron tagged RAD21
clone B1 unsynchronized 24 hr DMSO control
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone D7
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone D7 unsynchronized 24 hr dTAG-v1
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone D7
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone D7 mitotic 8 hr post release dTAG-v1
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone D7
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone D7 unsynchronized 4 hr dTAG-v1
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone D7
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone D7 mitotic 120 min post release dTAG-v1
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone D7
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone D7 mitotic 90 min post release dTAG-v1
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone D7
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone D7 mitotic 60 min post release dTAG-v1
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone D7
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone D7 mitotic 30 min post release dTAG-v1
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone D7
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone D7 mitotic 0 min post release dTAG-v1
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone D7
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone D7 unsynchronized 24 hr DMSO control
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone D7
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone D7 mitotic 8 hr post release DMSO control
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone D7
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone D7 mitotic 120 min post release DMSO control
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone D7
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone D7 mitotic 90 min post release DMSO control
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone D7
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone D7 mitotic 60 min post release DMSO control
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone D7
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone D7 mitotic 30 min post release DMSO control
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone D7
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone D7 mitotic 0 min post release DMSO control
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone A2
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone A2 unsynchronized 24 hr dTAG-v1
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone A2
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone A2 unsynchronized 4 hr dTAG-v1
Enzyme
Arima - A1, A2
in situ Hi-C
dTAG-NIPBL hTERT-RPE-1 - clone A2
Hi-C on hTert-RPE1 with degron tagged NIBPL
clone A2 unsynchronized 24 hr DMSO control
Enzyme
Arima - A1, A2
- fin -