File4DNFI3O8MVGX
released
June 1st, 2022 at 2:41pm
Note(s)
- This mcool matrix file was generated from the file 4DNFIZERUF7M containing clusters of sizes from 2-1000 generated by the Yamada lab by the 4DN-DCIC using cooler version 0.8.11 scripts based on this gist: https://gist.github.com/nvictus/aacf3530b95251e1a0945a7e36fa28ac and the zoomify function
- This file contains processed results performed outside of the 4DN-DCIC standardized pipelines. The file and the information about its provenance, i.e. which files were used as input to generate this output was provided by or done in collaboration with the lab that did the experiments to generate the raw data. For more information about the specific analysis performed, please contact the submitting lab or refer to the relevant publication if available.
- WARNING - Due to a bug in the version of cooler (0.8.3) used in the current 4DN standard Hi-C processing pipeline some pixels may occur mulitple times at a single resolution with different counts being reported for each occurence. This duplication does not affect the higlass display of these files, howevver, downstream analyses using this file may encounter issues due to this pixel duplication. The counts from the duplicate pixels can be aggregated to determine the correct count value at that location. If this issue is problematic for your needs you should consider regenerating the matrices from the merged pairs file of the associated dataset using a more recent version of cooler. We are working to update the pipeline but do not yet have a predicted date for when this issue will be resolved.
Properties
File Format
File Type
Contact Matrix
General Classification
Processed File
(Supplementary)
(Supplementary)
File Size
10.86 GB
More Information
Quality Metric Summary
Failed Balancing
None