ExperimentSetReplicate

ExperimentSet4DNESZH62G1Y
released

RNA-seq on cerebellar granule neurons with ctrl vector isolated using syncTRAP at day 8 after in vivo electroporation from CD1 mouse postnatal day 14

   February 27th, 2024 at 5:32pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
primary cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

28 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXDMMEN57
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIX1NMJZB
17.47m
16.29m
Experiment
4DNEXUNGNIA9
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFI2GVUTZB
18.63m
17.32m
Experiment
4DNEX5BA5TTT
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFI1C1PJTT
15.37m
14.41m
Experiment
4DNEXGNRQ94J
Bio Rep 4, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIXAYR5NJ
18.63m
17.52m
Experiment
4DNEXQ3QT3XY
Bio Rep 5, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIF2EQHEI
15.68m
14.85m
Experiment
4DNEXWMYD5O9
Bio Rep 6, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIQNQWQG6
20.44m
19.48m
Experiment
4DNEXSTJU47D
Bio Rep 7, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIU22JNA4
13.42m
12.51m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXDMMEN57
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFI1GWNPWX
15.57m
143.1k
Experiment
4DNEXUNGNIA9
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIAWJA966
19.39m
147.34k
Experiment
4DNEX5BA5TTT
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIGB6ZPXD
13.86m
126.53k
Experiment
4DNEXGNRQ94J
Bio Rep 4, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFI54Q8NVV
15.23m
98.36k
Experiment
4DNEXQ3QT3XY
Bio Rep 5, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFICLG1GRZ
8.53m
52.19k
Experiment
4DNEXWMYD5O9
Bio Rep 6, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIOSS4AS3
11.07m
210.18k
Experiment
4DNEXSTJU47D
Bio Rep 7, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIWPVR6MY
12.38m
254.2k