ExperimentSetReplicate

ExperimentSet4DNESYWW1OG2
released

ATAC-seq on primary motor cortex from White-tufted-ear marmoset - Peregrine

   April 12th, 2024 at 11:40pm
Source Publication

Aggregated non-redundant peaks - NoRef  


NOTE Non-redundant peaks aggregated from multiple donors in bed format is provided as a supplementary file. As 4DN does not host the genome assembly for this organism, this bed file cannot be visualized using HiGlass tool. However, users can download HiGlass tool from here for visualization purposes. While visualizing file through HiGlass please note that peaks of a specific cell type are represented using different track colors. Additionally, a zipped folder containing individual bed files specific for each cell type is also provided. The information on track colors and associated cell type can be accessed via a key file here


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
tissue
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

54 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBS9ERB71P
Bio Replicate 1
Experiment
4DNEX2VVZWD2
Tech Replicate 1
Grp 1
6.08 GB
101
  Pass
126.94m
6.17 GB
101
  Pass
126.94m
2.02 GB
24
  Pass
126.94m
Grp 2
6.07 GB
101
  Pass
126.57m
6.17 GB
101
  Pass
126.57m
2.01 GB
24
  Pass
126.57m
Grp 3
6.14 GB
101
  Pass
127.67m
6.25 GB
101
  Pass
127.67m
2.03 GB
24
  Pass
127.67m
Grp 4
122.09 MB
50
  Pass
3.94m
124.02 MB
50
  Pass
3.94m
63.47 MB
16
  Pass
3.94m
Grp 5
122.38 MB
50
  Pass
3.98m
123.8 MB
50
  Pass
3.98m
64.23 MB
16
  Pass
3.98m
Grp 6
119.19 MB
50
  Pass
3.87m
121.01 MB
50
  Pass
3.87m
62.26 MB
16
  Pass
3.87m
Grp 7
119.31 MB
50
  Pass
3.87m
121.21 MB
50
  Pass
3.87m
62.71 MB
16
  Pass
3.87m
Grp 8
19.88 GB
101
  Pass
402.32m
19.9 GB
101
  Pass
402.32m
6.35 GB
24
  Pass
402.32m
Grp 9
19.87 GB
101
  Pass
402.25m
19.98 GB
101
  Pass
402.25m
6.37 GB
24
  Pass
402.25m
Biosample
4DNBSZ8U3Q79
Bio Replicate 2
Experiment
4DNEXTGGWVWK
Tech Replicate 1
Grp 1
8.23 GB
101
  Pass
164.25m
8.02 GB
101
  Pass
164.25m
2.61 GB
24
  Pass
164.25m
Grp 2
8.26 GB
101
  Pass
164.59m
8.05 GB
101
  Pass
164.59m
2.61 GB
24
  Pass
164.59m
Grp 3
8.33 GB
101
  Pass
165.41m
8.12 GB
101
  Pass
165.41m
2.64 GB
24
  Pass
165.41m
Grp 4
16.21 GB
101
  Pass
316.18m
15.74 GB
101
  Pass
316.18m
5.04 GB
24
  Pass
316.18m
Grp 5
16.19 GB
101
  Pass
315.82m
15.8 GB
101
  Pass
315.82m
5.04 GB
24
  Pass
315.82m
Grp 6
113.65 MB
50
  Pass
3.63m
113.75 MB
50
  Pass
3.63m
60.77 MB
16
  Pass
3.63m
Grp 7
113.93 MB
50
  Pass
3.67m
113.57 MB
50
  Pass
3.67m
61.58 MB
16
  Pass
3.67m
Grp 8
110.47 MB
50
  Pass
3.55m
110.52 MB
50
  Pass
3.55m
59.35 MB
16
  Pass
3.55m
Grp 9
110.16 MB
50
  Pass
3.54m
110.33 MB
50
  Pass
3.54m
59.43 MB
16
  Pass
3.54m