ExperimentSetReplicate

ExperimentSet4DNESXMYXWR8
released

RNA-seq on cerebellar granule neurons with control vector isolated using FANS at day 8 after in vivo electroporation from dCas9-KRAB mouse postnatal day 14

   February 27th, 2024 at 5:32pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
primary cells
Experiment Type(s) 
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
None

50 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXX32ZGTM
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIE19XZ1T
21.4m
20.88m
Experiment
4DNEXKW8L5VK
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIAVJ46VE
20.76m
20.26m
Experiment
4DNEXTSD1GK4
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFI68LAZKX
20.84m
20.37m
Experiment
4DNEXWQDALSS
Bio Rep 4, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIWSWE54R
26.69m
26.11m
Experiment
4DNEXGBAC3IE
Bio Rep 5, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFICBMRQGU
26.26m
25.67m
Experiment
4DNEX1JUREPQ
Bio Rep 6, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIUH8W6P6
22.06m
21.55m
Experiment
4DNEXQDIB2QN
Bio Rep 7, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFILI59LY6
22.58m
22.08m
Experiment
4DNEXDN32KRX
Bio Rep 8, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFI14XQTQY
22.99m
22.46m
Experiment
4DNEXA5URPAP
Bio Rep 9, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFI42RI29B
20.02m
19.52m
Experiment
4DNEXGDBEVDV
Bio Rep 10, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Read Positions (bam)
4DNFIF8Y3ZC6
21.32m
20.83m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXX32ZGTM
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFI4F589TT
7.71m
49.34k
Experiment
4DNEXKW8L5VK
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFI943A52H
7.8m
48.4k
Experiment
4DNEXTSD1GK4
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIMTGM9UZ
6.73m
23.33k
Experiment
4DNEXWQDALSS
Bio Rep 4, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIV4J5VAP
8.28m
25.87k
Experiment
4DNEXGBAC3IE
Bio Rep 5, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIEI5PP7B
9.03m
36.64k
Experiment
4DNEX1JUREPQ
Bio Rep 6, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFISRT8ZKN
7.28m
26.34k
Experiment
4DNEXQDIB2QN
Bio Rep 7, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFI42FXG9S
7.59m
38.26k
Experiment
4DNEXDN32KRX
Bio Rep 8, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIRGJ1RFB
8.15m
61.46k
Experiment
4DNEXA5URPAP
Bio Rep 9, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIE6H6GJA
7.43m
94.31k
Experiment
4DNEXGDBEVDV
Bio Rep 10, Tec Rep 1
RNA-seq on cerebellar granule neuron - 8 days old
File
Gene Expression (tsv)
4DNFIZBB3OF2
7.9m
40.2k