ExperimentSetReplicate

ExperimentSet4DNESXK5C9VC
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ChIP-seq for PolII on 24 hour activated B cells, treated with flavopiridol (2 hour) to inhibit transcription

   November 27th, 2018 at 6:26pm
Source Publication
The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L, Pekowska A, et al., Cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
B cell derived cell line
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Polr2a mouse protein

4 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXR7QV98T
Bio Rep 1, Tec Rep 1
ChIP-seq against Polr2a mouse protein on B cell derived cell line
File
Read Positions (bed)
4DNFIGZNXGR9
0.81
0.85
22.18m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESXK5C9VC
Multiple Experiments
File
Peaks (bigbed)
4DNFIOS8419A
26.42k
0.0
1.0
0.21