ExperimentSetReplicate

ExperimentSet4DNESW2YH33A
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ChIP-seq for CTCF on CH12

   November 27th, 2018 at 6:26pm
Source Publication
The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L, Pekowska A, et al., Cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
CH12
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Ctcf mouse protein

6 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXZ9296IW
Bio Rep 1, Tec Rep 1
ChIP-seq against Ctcf mouse protein on CH12
File
Read Positions (bed)
4DNFI49TRTEQ
0.88
0.88
22.74m
Experiment
4DNEXRT8S638
Bio Rep 2, Tec Rep 1
ChIP-seq against Ctcf mouse protein on CH12
File
Read Positions (bed)
4DNFI2EAAN4A
0.9
0.9
6.28m
Experiment
4DNEXMESJJSS
Bio Rep 3, Tec Rep 1
ChIP-seq against Ctcf mouse protein on CH12
File
Read Positions (bed)
4DNFI5SVPYOO
0.46
0.43
7.07m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESW2YH33A
Multiple Experiments
File
Peaks (bigbed)
4DNFIE31NE87
40.59k
1.24
2.93
0.12