ExperimentSetReplicate

ExperimentSet4DNESVCBVRHM
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ChIP-seq of untreated CTCF-AID mouse embryonic stem cells targetting H3K27me3 gene

   November 7th, 2018 at 9:13pm
Source Publication
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Nora EP, Goloborodko A, et al., Cell 2017

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with CTCF-AID
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: H3K27me3

5 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEX83C6KCD
Bio Rep 1, Tec Rep 1
ChIP-seq against H3K27me3 on ES-E14TG2a with CTCF-AID
File
Read Positions (bed)
4DNFIMVM1OQN
0.69
0.67
29.31m
Experiment
4DNEXK7KILCH
Bio Rep 2, Tec Rep 1
ChIP-seq against H3K27me3 on ES-E14TG2a with CTCF-AID
File
Read Positions (bed)
4DNFIJ76DFMA
0.87
0.87
39.84m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESVCBVRHM
Multiple Experiments
File
Peaks (bigbed)
4DNFID71D51J
63.92k
1.01
1.4
0.29