ExperimentSetReplicate

ExperimentSet4DNESRT5R12W
released

RNA-seq on primary motor cortex from White-tufted-ear marmoset - Peregrine

   April 16th, 2024 at 3:23pm
Source Publication

Aggregated non-redundant peaks - NoRef  


NOTE Non-redundant peaks aggregated from multiple donors in bed format is provided as a supplementary file. As 4DN does not host the genome assembly for this organism, this bed file cannot be visualized using HiGlass tool. However, users can download HiGlass tool from here for visualization purposes. While visualizing file through HiGlass please note that peaks of a specific cell type are represented using different track colors. Additionally, a zipped folder containing individual bed files specific for each cell type is also provided. The information on track colors and associated cell type can be accessed via a key file here


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
tissue
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

20 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBSJWIXIRH
Bio Replicate 1
Experiment
4DNEX9LUCJ9H
Tech Replicate 1
Pair 1
23.3 GB
101
  Pass
375.04m
18.67 GB
101
  Pass
375.04m
Pair 2
17.95 MB
28
  Pass
823.93k
43.72 MB
91
  Pass
823.93k
Pair 3
17.82 MB
28
  Pass
820.53k
43.28 MB
91
  Pass
820.53k
Pair 4
18.24 MB
28
  Pass
838.4k
44.25 MB
91
  Pass
838.4k
Pair 5
17.38 MB
28
  Pass
799.62k
42.15 MB
91
  Pass
799.62k
Biosample
4DNBSBVKJW2Q
Bio Replicate 2
Experiment
4DNEXHKO1KYM
Tech Replicate 1
Pair 1
21.34 GB
101
  Pass
343.14m
17.15 GB
101
  Pass
343.14m
Pair 2
16.49 MB
28
  Pass
755.12k
40.47 MB
91
  Pass
755.12k
Pair 3
16.37 MB
28
  Pass
751.91k
40.05 MB
91
  Pass
751.91k
Pair 4
16.71 MB
28
  Pass
765.6k
40.81 MB
91
  Pass
765.6k
Pair 5
15.94 MB
28
  Pass
731.18k
38.92 MB
91
  Pass
731.18k