ExperimentSetReplicate

ExperimentSet4DNESR541HPJ
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Chip-seq with anti-Pol2A on differentiated cells, as control

   April 25th, 2018 at 2:34pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: RNA Pol II

6 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXGX9TY6L
Bio Rep 1, Tec Rep 1
ChIP-seq against RNA Pol II on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
Read Positions (bed)
4DNFIEPC2AHM
0.63
0.61
27.4m
Experiment
4DNEXIG7INVJ
Bio Rep 2, Tec Rep 1
ChIP-seq against RNA Pol II on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
Read Positions (bed)
4DNFIS64T7OR
0.42
0.36
25.23m
Experiment
4DNEX2YTDQGM
Bio Rep 3, Tec Rep 1
ChIP-seq against RNA Pol II on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
Read Positions (bed)
4DNFIQM6NA1X
0.83
0.84
23.22m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESR541HPJ
Multiple Experiments
File
Peaks (bigbed)
4DNFIZARUDXN
10.09k
1.08
1.09
0.06