ExperimentSetReplicate

ExperimentSet4DNESPRWVLPX
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Late fraction S-phase Repliseq on YY1 knockdown v6.5 mESCs - 2 replicates were grown and BrdU-labeled individually prior to FACS sorting

   November 15th, 2019 at 6:56pm
Source Publication
Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.
Sima J, Chakraborty A, et al., Cell 2019

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
V6.5 with YY1-dTAG
Experiment Type(s) 
2-stage Repli-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Fraction: late of 2 fractions

4 Processed Files

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEXURCJNR5
Bio Rep 1, Tec Rep 1
2-stage Repli-seq on V6.5 with YY1-dTAG S-phase late
File
Alignments (bam)
4DNFIZVQXTBI
44.94m
12.035%
Experiment
4DNEXLHUGZ2K
Bio Rep 2, Tec Rep 1
2-stage Repli-seq on V6.5 with YY1-dTAG S-phase late
File
Alignments (bam)
4DNFI83PFYBS
35.99m
13.151%