ExperimentSetReplicate

ExperimentSet4DNESNW6E6MA
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Biological replicates of Rad21 ChIP-seq on G1E-ER4 cells in late G1 phase

   March 3rd, 2020 at 8:08pm
Source Publication
Chromatin structure dynamics during the mitosis-to-G1 phase transition.
Zhang H, Emerson DJ, et al., Nature 2019

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with mCherry-MD
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Rad21 mouse protein

5 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXBW1YQMU
Bio Rep 1, Tec Rep 1
ChIP-seq against Rad21 mouse protein on G1E-ER4 with mCherry-MD
File
Read Positions (bed)
4DNFIL21VGQP
0.76
0.75
23.15m
Experiment
4DNEXR1AKQ4N
Bio Rep 2, Tec Rep 1
ChIP-seq against Rad21 mouse protein on G1E-ER4 with mCherry-MD
File
Read Positions (bed)
4DNFILW5RDTD
0.75
0.75
29.93m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESNW6E6MA
Multiple Experiments
File
Peaks (bigbed)
4DNFIHAFJG6E
18.63k
1.14
1.52
0.03