ExperimentSetReplicate

ExperimentSet4DNESMX5EBFU
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Chip-seq with anti-Pol2A on differentiated cells with flavopiridol

   April 25th, 2018 at 2:34pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: RNA Pol II

6 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXLZ9YE52
Bio Rep 1, Tec Rep 1
ChIP-seq against RNA Pol II on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
Read Positions (bed)
4DNFIEHCNPYQ
0.82
0.83
18.89m
Experiment
4DNEXX5S7M1I
Bio Rep 2, Tec Rep 1
ChIP-seq against RNA Pol II on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
Read Positions (bed)
4DNFISI8WL9F
0.88
0.89
20.2m
Experiment
4DNEXK33Y5QC
Bio Rep 3, Tec Rep 1
ChIP-seq against RNA Pol II on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
Read Positions (bed)
4DNFIGFDHZ76
0.88
0.89
23.09m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESMX5EBFU
Multiple Experiments
File
Peaks (bigbed)
4DNFIML5QF3Y
8.57k
1.03
1.04
0.07