ExperimentSet4DNESKLFZ31S
released
November 27th, 2018 at 6:26pm
Source Publication
The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L, Pekowska A, et al., Cell 2018
Assay Description
Note on Processed Files
Some annotated bam and pairs files generated in this Experiment Set may contain distinct reads that share the same identifier. This was caused by merging fastq files with integer identifiers (eg. @1, @2) during processing.
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
immortalized cells
Experiment Type(s)
Modification Type
None
Treatment Type
None
Assay Details
Enzyme: MboI
32 Processed Files
Quality Metrics
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
Experiment
4DNEXWLU575K
Bio Rep 1, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEXBPP27G9
Bio Rep 2, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEXDKVJTLE
Bio Rep 3, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEXJHBIR4D
Bio Rep 4, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEX8NLXSVO
Bio Rep 5, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEXWX2C3EN
Bio Rep 6, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
For File
Failed Balancing
Details
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXWLU575K
Bio Rep 1, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEXBPP27G9
Bio Rep 2, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEXDKVJTLE
Bio Rep 3, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEXJHBIR4D
Bio Rep 4, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEX8NLXSVO
Bio Rep 5, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEXWX2C3EN
Bio Rep 6, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEXPZBTZJB
Bio Rep 7, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEXLYC2SAM
Bio Rep 8, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEXUG5OQFM
Bio Rep 9, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEXW3495QV
Bio Rep 10, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEXFQCBHAU
Bio Rep 11, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEXNG28KDK
Bio Rep 12, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEX9HIVFU5
Bio Rep 13, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboIExperiment
4DNEX32C8NZ7
Bio Rep 14, Tec Rep 1
in situ Hi-C on HCT116 with Crispr generated mClover and AID-tagged RAD21 with MboI