ExperimentSetReplicate

ExperimentSet4DNESKIB4QKT
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ChIP-seq of CTCF-AID mouse embryonic stem cells treated with Auxin for 2 days targetting H3K27me3 gene

   November 7th, 2018 at 9:13pm
Source Publication
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Nora EP, Goloborodko A, et al., Cell 2017

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with CTCF-AID
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: H3K27me3

5 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXN8YEAD3
Bio Rep 1, Tec Rep 1
ChIP-seq against H3K27me3 on ES-E14TG2a with CTCF-AID
File
Read Positions (bed)
4DNFIGOKI9A9
0.87
0.87
34.94m
Experiment
4DNEXJDEKKSA
Bio Rep 2, Tec Rep 1
ChIP-seq against H3K27me3 on ES-E14TG2a with CTCF-AID
File
Read Positions (bed)
4DNFI3ZBUYEZ
0.85
0.85
36.9m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESKIB4QKT
Multiple Experiments
File
Peaks (bigbed)
4DNFI2P2BV9W
57.56k
1.04
1.32
0.28