ExperimentSetReplicate

ExperimentSet4DNESK46EYO5
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Chip-seq with anti-Pol2A on undifferentiated cells with JQ1

   April 25th, 2018 at 2:34pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: RNA Pol II

6 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEX2U75BEV
Bio Rep 1, Tec Rep 1
ChIP-seq against RNA Pol II on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
Read Positions (bed)
4DNFIWLSHNOG
0.67
0.66
21.46m
Experiment
4DNEX84CCNLO
Bio Rep 2, Tec Rep 1
ChIP-seq against RNA Pol II on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
Read Positions (bed)
4DNFIULN4W4S
0.78
0.79
23.99m
Experiment
4DNEXTWNEAEY
Bio Rep 3, Tec Rep 1
ChIP-seq against RNA Pol II on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
Read Positions (bed)
4DNFITHLM5OI
0.83
0.83
24.12m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESK46EYO5
Multiple Experiments
File
Peaks (bigbed)
4DNFIR92NIHK
11.48k
1.03
1.22
0.12