ExperimentSetReplicate

ExperimentSet4DNESJYWQ2B9
released

CTCF ChIP-seq on C57BL/6NCrl embryonic day 12.5 mouse craniofacial prominence

   April 24th, 2022 at 12:11am
Source Publication
Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues.
Yu M, Zemke NR, et al., Nature structural & molecular biology 2024

Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
tissue
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: CTCF protein

5 Processed Files

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXPUNOC7F
Bio Rep 1, Tec Rep 1
ChIP-seq against CTCF protein on embryonic facial prominence
File
Read Positions (bed)
4DNFIXC77B3Q
0.97
0.97
14.83m
Experiment
4DNEX8LIXAQ4
Bio Rep 2, Tec Rep 1
ChIP-seq against CTCF protein on embryonic facial prominence
File
Read Positions (bed)
4DNFIZFXTEEM
0.97
0.96
17.2m